Reconstruct is a Windows application for montaging, aligning, tracing, measuring, and reconstructing objects from serial section images.
For details see:
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Can reconstruct be used for generating 3d models from brain atlases... like 160 images? Also can the z trace smoothing method be applyed to multiple objects in
I think i aligned the sections correctly , but the 3d model doesn't look so good. I can send an archive with all the files for recontruct to anyone who wants