Dr. Castro, Which version of Windows are you using? I think that this problem may be solved by running a 64-bit operating system with the 64-bit version of...
Thank you so much, I was using the 1.1.0.0 32-bit version I downloaded from Synapse Web and didn´t know there was a new 64-bit version. I forgot to mention I...
Hi there As the subject heading suggests, I am wondering if there is a way in which I can reorder the sequence of my sectins once they have been imported into...
Hi Darren, If you go to the synapses.clm.utexas.edu\tools site you can download the program Convert, which allows you to do this (as well as to convert a bunch...
dear reconstructor, I am wondering if you know how to export all traces from reconstruction to software such as excel. If you check menu Trace|List traces, you...
For traces: click on Traces>List>save - and then when it asks for the filename be sure to name it name.csv -- actually type the .csv after the name that you...
Thank you, Kristen. The answer is that for traces I have to do it section by section and merge all csv files. For objects I can export all of them into one...
Yes From: reconstruct_users@yahoogroups.com [mailto:reconstruct_users@yahoogroups.com] On Behalf Of jianli li Sent: Monday, July 27, 2009 3:07 PM To:...
Hi all, I'm wondering whether there's any way to reduce the calculational efforts for 3D objects when working with Boissonat surfaces. I have already reduced...
I have some 2D photos of brain sections and I don't understand how to make the calibratins and aligments when I transformate the photos in 3D. The structures...
Hi, I wondered if it is possible to give a structure (like a synapse) a simple xyz-coordinate in Reconstruct. How do I do this? It is not possible to draw a...
Hi Larry, To your question of what extra functions could be useful: It's great that one can set the distances of all objects to be listed. However, in our lab,...
Dear Kristen, I would love to have the same function but it does not seem trivial. For PSD, taking the center of mass of the reconstructed PSD and calculating...
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I have here 2 brainstem photos form an atlas. I need some help in aligning the x axis. I tried placing 3 points at 0 , 5 and 9 and i tried a linear alignment....
Fiducials?You mean points? Last night i placed six points , 3 on the x and 3 on y and i think it worked but i am not that sure...perhaps this is not what you...
Align only the numbers you see at the y axis. The two levels are so distant from each other that you won't experience any similarities. Do it with Photoshop...
Hi Larry, Here are some more suggestions I missed to report so far: 1. There is no scale in the 3D scene. One can draw traces with known size, but that will...
I agree with some of this. The way to display objects with translucency inthe scene K Sent from my iPhone On Sep 15, 2009, at 8:01 AM, "kristofgiber"...
Hi there, 1,3,4 would certainly be of benefit. I have experimented with a spherical scale "bar", but this has to be dead centre in the axis of rotation, other...
I recently did an alignment to 24 brainstem photos , using a grid , scaled by the folowing dimnesions of a cell: the distance from 0 to 1 on x axis , and the...
Thanks a lot for your advice, Rob. I will try it, although I used to experience some limitations of semi-transparent membranes: Since the rear side of the...
I think i aligned the sections correctly , but the 3d model doesn't look so good. I can send an archive with all the files for recontruct to anyone who wants...
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Can reconstruct be used for generating 3d models from brain atlases... like 160 images? Also can the z trace smoothing method be applyed to multiple objects in...
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