Reconstruct Users, The latest version of Reconstruct (v1.0.5.0) is available from: http://synapses.bu.edu/tools/download.htm along with documentation updated...
Hi John, Thanks for the update to Reconstruct. Great program. Since you've updated the documentation, I thought I'd download local copies. Everything opened...
Deanna, To reorder some sections in your series use the Numbering... item from the Modfiy menu of the Section List. First highlight the sections you want to...
Dear Dr. Fiala, It is me again... It is just to say that quite often, after tracing a line in the sections, if I open the 3D view, this line appears in the...
Enter your vote today! A new poll has been created for the reconstruct_users group: If a printed, bound, paperback Users Manual were available, how many...
reconstruct_users@yah...
Jul 8, 2005 12:14 pm
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Jon, Try version 1.0.5.1 (http://groups.yahoo.com/group/reconstruct_users/files/) and see if this fixed your problem. In v1.0.5.1 a scene Reset should always...
Dear John, me again, I thougth the bug was solved since it did not happen again for a while, but suddenly.... it appeared again. At least I have more detailed...
Jon, Are you try to generate a Boissonnat surface for an open polyline? This will not work because Boissonnat's algorithm is only for closed traces, not open...
Jon, OK, see if I've really fixed it now in v1.0.5.2 (http://groups.yahoo.com/group/reconstruct_users/files/)... Also, take a look at the modified Object List...
Currently im still aligning serial EM sections, but we're now reconstructing dendritic areas where the sections are about 15-25 images montaged. My question...
Steve, Sorry to hear version 1.0.5.2 is unstable. Perhaps I broke something related to the creation of Z-traces. I'll check on it. Any details on exactly WHEN...
Bin Ma, A semiautomated segmentation that seems to work well for confocal is the Wildfire Tool (http://synapses.bu.edu/tools/chapter8.pdf). For a description...
John, I just have detected a bug in the 3D scene. I render all objects (Boissonnat), remove one object and reset the scene to recenter remaining objects. I...
John, another detail: Also if rendering only some objects from the object list in the 3D scene, after exporting it as jpeg file, back to the 3D scene, it...
Steve, The fact that the new object or z-trace does not appear in the scene is due to the fact that the viewpoint into the scene is not resized to accommodate...
Steve, I found the bug in Reconstruct that was causing the 3D Scene to crash. It happens in v1.0.5.2 when you add one or more objects or z-traces to the scene...
Jon, I've seen some intermittent anomalous behavior similar to what you're describing, but I can't make it happen again so I'm having a hard time nailing down...
Reconstruct Users, I've posted fixes to the recent spate of bugs as new version v1.0.5.3 available at: http://groups.yahoo.com/group/reconstruct_users/files/ ...
Jon, Sorry to hear that the problem is still there. If anyone else is experiencing these same problems, please confirm and help describe the conditions under...
Dear John, It is me again. As usual, I write you to suggest another new feature for Reconstruct.. Since the 3D viewer automatically scales the objects to be...
Hi John, I just installed v1045 and was surprised to find that the wildfire tool doesn't seem to generate traces that avoided existing traces. Did you take...
I'm new to this so I'm trying to take a few baby steps. So far I can't even stand up. The goal is to create and align many montages, but I can't even get a ...
Brian, Certainly the program shouldn't crash when creating a domain boundary or adjusting contrast on a domain, and I haven't seen it crash like that with my...
Richard, There was a problem with exporting large images as black in versions 1.0.5.2 and before. But this seems to be fixed in my v1.0.5.4. You'll have to...
Can't list objects more than once. This problem appears to be computer specific and only occurs on our newest computer with the new RAID disk drives. Loading...
Brian, The problem appears to be in the background thread that reads the section files and gathers the object list data. The thread is doing the same thing as...
Reconstruct Users, Frequently I'm asked whether Linux will run under LINUX and so I'm posting this email to the group to let everyone know that it apparently...
OK, ok. I need to start proofreading my emails... ... From: "John Fiala" <fiala@...> To: "Reconstruct Users" <reconstruct_users@yahoogroups.com> Sent:...
Dear All, I am a new user of the reconstruct software and I have a question: Is it possible to trace a single structure on a single section ? In my serial...
Ulysses, If you generate the object as a Sphere in 3D (or as Traces, Trace Midpoints, or Box) it will be visible. Go the 3D tab in the Series Options. John. ...
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