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simmol--problem using proline?   Message List  
Reply | Forward Message #810 of 892 |
Hi simmol users,

I have encountered an problem when defining a csa on proline C'. if
I add amide protons there is no problem, however, if I directly use a
pdb structure (with protons) I get an error for the proline residue.
Is there a way to define the csa without adding a dummy proton atom
to the proline? It is not very satisfying to see an amide proton on
proline.

any help would be much appreciated.

-Andreas



Mon Jun 16, 2008 12:22 pm

moulee29
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Message #810 of 892 |
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Hi simmol users, I have encountered an problem when defining a csa on proline C'. if I add amide protons there is no problem, however, if I directly use a pdb...
Loren Andreas
moulee29
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Jun 16, 2008
12:22 pm

Hi, simmol uses the amide proton to define the peptide plane coordinate system, so in order to use the built-in coordinate system you need to use the...
Thomas Vosegaard
vosegaard
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Jun 16, 2008
1:18 pm
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